STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MOC_3207Squalene/phytoene synthase. (356 aa)    
Predicted Functional Partners:
MOC_3208
Phytoene desaturase.
 
 0.999
MOC_5741
Phytoene desaturase.
 
 0.996
bchP
Geranylgeranyl reductase BchP.
 
 
 0.974
MOC_2698
Squalene/phytoene synthase.
 
  
 0.971
MOC_3187
Phytoene desaturase.
 
  
 0.962
MOC_5734
Phytoene desaturase.
 
  
 0.962
MOC_3186
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 0.959
MOC_3188
Hydroxyneurosporene synthase.
 
  
 0.936
MOC_0776
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.920
MOC_5915
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.915
Your Current Organism:
Methylobacterium oryzae
NCBI taxonomy Id: 693986
Other names: M. oryzae CBMB20, Methylobacterium oryzae CBMB20, Methylobacterium oryzae str. CBMB20, Methylobacterium oryzae strain CBMB20
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