STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MOC_3208Phytoene desaturase. (507 aa)    
Predicted Functional Partners:
MOC_3207
Squalene/phytoene synthase.
 
 0.999
MOC_3188
Hydroxyneurosporene synthase.
 
 
 0.985
MOC_2698
Squalene/phytoene synthase.
  
 
 0.984
MOC_5741
Phytoene desaturase.
  
  
0.929
MOC_3206
Protein of unassigned function.
       0.846
hpnD
Squalene synthase HpnD.
 
  
 0.838
MOC_3185
O-methyltransferase family 2.
 
  
 0.728
bchD
Magnesium chelatase subunit BchD.
 
  
 0.696
hpnC
Squalene synthase HpnC.
 
  
 0.684
bchF
2-vinyl bacteriochlorophyllide hydratase BchF.
 
  
 0.629
Your Current Organism:
Methylobacterium oryzae
NCBI taxonomy Id: 693986
Other names: M. oryzae CBMB20, Methylobacterium oryzae CBMB20, Methylobacterium oryzae str. CBMB20, Methylobacterium oryzae strain CBMB20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.