close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MOC_3208Phytoene desaturase. (507 aa)    
Predicted Functional Partners:
MOC_3207
Squalene/phytoene synthase.
 
 0.998
MOC_2698
Squalene/phytoene synthase.
  
 
 0.974
MOC_3188
Hydroxyneurosporene synthase.
 
 
 0.973
MOC_5741
Phytoene desaturase.
  
  
0.922
hpnD
Squalene synthase HpnD.
 
  
 0.878
hpnC
Squalene synthase HpnC.
 
  
 0.779
MOC_3206
Protein of unassigned function.
       0.748
bchD
Magnesium chelatase subunit BchD.
 
  
 0.709
bchF
2-vinyl bacteriochlorophyllide hydratase BchF.
 
  
 0.619
MOC_3209
Hep_Hag repeat-containing protein.
       0.568
Your Current Organism:
Methylobacterium oryzae
NCBI taxonomy Id: 693986
Other names: M. oryzae CBMB20, Methylobacterium oryzae CBMB20, Methylobacterium oryzae str. CBMB20, Methylobacterium oryzae strain CBMB20
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.