Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MOC_4792MltA-interacting MipA family protein. (292 aa)    
Predicted Functional Partners:
MOC_4793
Heavy metal transport/detoxification protein.
       0.688
MOC_3546
Protein of unassigned function.
  
     0.525
msrB
Peptide methionine sulfoxide reductase MsrB.
   
    0.514
MOC_4014
Protein of unassigned function.
  
     0.504
MOC_4395
Porin.
  
     0.495
MOC_4901
Porin.
  
     0.490
MOC_4791
Diguanylate phosphodiesterase.
       0.484
MOC_2367
Putative ABC transporter protein.
  
     0.480
MOC_2093
Protein of unassigned function.
  
     0.476
MOC_2073
Protein of unassigned function.
  
     0.471
Your Current Organism:
Methylobacterium oryzae
NCBI taxonomy Id: 693986
Other names: M. oryzae CBMB20, Methylobacterium oryzae CBMB20, Methylobacterium oryzae str. CBMB20, Methylobacterium oryzae strain CBMB20
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