STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_0111FemAB-related protein, PEP-CTERM system-associated. (343 aa)    
Predicted Functional Partners:
DFW101_0110
Sugar transferase, PEP-CTERM/EpsH1 system associated.
 
     0.951
DFW101_0103
Polysaccharide deactylase family protein, PEP-CTERM locus subfamily.
 
   
 0.815
DFW101_0104
O-antigen polymerase.
 
     0.799
DFW101_0091
Eight transmembrane protein EpsH.
 
     0.790
DFW101_0099
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.
 
     0.783
DFW101_0112
Transport permease protein.
       0.762
DFW101_0093
Multi-sensor signal transduction histidine kinase.
  
     0.755
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
  
 
 0.725
DFW101_0097
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
     0.708
DFW101_0101
Secretion ATPase, PEP-CTERM locus subfamily.
 
     0.705
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.