STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_0112Transport permease protein. (274 aa)    
Predicted Functional Partners:
DFW101_0113
Teichoic-acid-transporting ATPase.
 
 0.999
DFW101_0972
Teichoic-acid-transporting ATPase.
 
 0.998
DFW101_0110
Sugar transferase, PEP-CTERM/EpsH1 system associated.
 
  
 0.821
DFW101_0098
Polysaccharide export protein.
  
  
 0.774
DFW101_1578
Polysaccharide export protein.
  
  
 0.774
DFW101_0111
FemAB-related protein, PEP-CTERM system-associated.
       0.762
DFW101_1190
ABC-2 type transporter.
    
  0.722
DFW101_2246
Transport permease protein.
    
  0.722
DFW101_0974
Glycosyl transferase group 1.
 
  
 0.674
DFW101_0122
Acetyltransf_6 domain-containing protein.
  
  
 0.632
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.