STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_0236Lactate utilization protein B/C. (217 aa)    
Predicted Functional Partners:
DFW101_0694
Pyruvate:ferredoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
 
 0.908
DFW101_2624
4Fe-4S ferredoxin-type domain-containing protein.
 
 0.864
DFW101_2166
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 
 0.849
DFW101_1872
Methyl-viologen-reducing hydrogenase delta subunit.
  
 0.848
DFW101_1231
2-oxoacid:acceptor oxidoreductase, alpha subunit.
  
 
 0.807
DFW101_0459
D-lactate dehydrogenase (Cytochrome).
  
 0.799
DFW101_1141
FAD linked oxidase domain protein.
  
 0.799
DFW101_1142
CoB--CoM heterodisulfide reductase.
  
 0.799
DFW101_1514
FAD linked oxidase domain protein.
  
 0.799
DFW101_2407
Glutamate synthase (NADPH).
    
 0.772
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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