STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_0372UspA domain-containing protein. (311 aa)    
Predicted Functional Partners:
DFW101_0371
Uncharacterized protein.
 
    0.888
DFW101_0366
Cytochrome c, class III, conserved region.
 
 
 0.879
DFW101_0370
HMC operon ORF 5 protein.
 
     0.870
DFW101_0374
Multi-sensor signal transduction histidine kinase.
 
   
 0.835
DFW101_0364
Multi-sensor signal transduction histidine kinase.
 
   
 0.802
DFW101_2045
Cytochrome c, class III, conserved region.
 
 
 0.792
DFW101_0368
Polysulfide reductase NrfD.
 
     0.785
DFW101_2042
Uncharacterized protein.
 
     0.612
DFW101_0367
HMC operon ORF 2 protein.
 
     0.606
DFW101_2043
Uncharacterized protein.
 
     0.602
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.