STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_0379Transglutaminase domain-containing protein. (281 aa)    
Predicted Functional Partners:
DFW101_0377
Alpha-E domain-containing protein.
 
  
 0.969
DFW101_0378
Uncharacterized protein.
 
    0.964
DFW101_0376
Uncharacterized protein.
 
  
 0.955
DFW101_3117
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
   0.795
DFW101_3155
Catalase; Belongs to the catalase family.
   
   0.769
DFW101_3476
UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
    
  0.649
DFW101_0384
Diguanylate cyclase.
     
 0.568
DFW101_0381
CheX domain-containing protein.
       0.562
DFW101_1669
VWFA domain-containing protein.
  
  
 0.562
DFW101_0380
Putative CheA signal transduction histidine kinase.
       0.551
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.