DFW101_0558 protein (Desulfovibrio carbinoliphilus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DFW101_0558

Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. (223 aa)

Predicted Functional Partners:

DFW101_0559

0.938

DFW101_0560

0.932

DFW101_1190

0.858

DFW101_0557

0.805

DFW101_3236

0.670

DFW101_2245

0.654

DFW101_1191

0.629

DFW101_3465

0.615

DFW101_0556

0.593

rpsI

0.587

Your Current Organism:

Desulfovibrio carbinoliphilus

NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFW101_0556	DFW101_0557	DFW101_0556	DFW101_0557	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	Cytochrome c assembly protein.	0.947
DFW101_0556	DFW101_0558	DFW101_0556	DFW101_0558	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.	0.593
DFW101_0556	DFW101_0559	DFW101_0556	DFW101_0559	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	Cytochrome c-type biogenesis protein CcmB.	0.964
DFW101_0556	DFW101_0560	DFW101_0556	DFW101_0560	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	Cytochrome c assembly protein.	0.997
DFW101_0556	DFW101_3465	DFW101_0556	DFW101_3465	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	Cytochrome c assembly protein.	0.975
DFW101_0557	DFW101_0556	DFW101_0557	DFW101_0556	Cytochrome c assembly protein.	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	0.947
DFW101_0557	DFW101_0558	DFW101_0557	DFW101_0558	Cytochrome c assembly protein.	Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.	0.805
DFW101_0557	DFW101_0559	DFW101_0557	DFW101_0559	Cytochrome c assembly protein.	Cytochrome c-type biogenesis protein CcmB.	0.961
DFW101_0557	DFW101_0560	DFW101_0557	DFW101_0560	Cytochrome c assembly protein.	Cytochrome c assembly protein.	0.967
DFW101_0558	DFW101_0556	DFW101_0558	DFW101_0556	Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	0.593
DFW101_0558	DFW101_0557	DFW101_0558	DFW101_0557	Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.	Cytochrome c assembly protein.	0.805
DFW101_0558	DFW101_0559	DFW101_0558	DFW101_0559	Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.	Cytochrome c-type biogenesis protein CcmB.	0.938
DFW101_0558	DFW101_0560	DFW101_0558	DFW101_0560	Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.	Cytochrome c assembly protein.	0.932
DFW101_0558	DFW101_1190	DFW101_0558	DFW101_1190	Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.	ABC-2 type transporter.	0.858
DFW101_0558	DFW101_1191	DFW101_0558	DFW101_1191	Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.	Sulfate-transporting ATPase.	0.629
DFW101_0558	DFW101_2245	DFW101_0558	DFW101_2245	Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.	Polyamine-transporting ATPase.	0.654
DFW101_0558	DFW101_3236	DFW101_0558	DFW101_3236	Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.	Fe(3+)-transporting ATPase.	0.670
DFW101_0558	DFW101_3465	DFW101_0558	DFW101_3465	Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.	Cytochrome c assembly protein.	0.615
DFW101_0558	rpsI	DFW101_0558	DFW101_1540	Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.587
DFW101_0559	DFW101_0556	DFW101_0559	DFW101_0556	Cytochrome c-type biogenesis protein CcmB.	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	0.964

page 1 of 4

Server load: low (36%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About