STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_0697Outer membrane autotransporter barrel domain protein. (637 aa)    
Predicted Functional Partners:
DFW101_3481
6-carboxy-5,6,7,8-tetrahydropterin synthase.
  
  
  0.635
DFW101_0214
6-carboxy-5,6,7,8-tetrahydropterin synthase.
  
  
  0.625
DFW101_0696
Signal transduction histidine kinase, nitrogen specific, NtrB.
 
    0.621
DFW101_1906
Outer membrane autotransporter barrel domain protein.
  
   
 0.604
DFW101_0695
Putative two component, sigma54 specific, transcriptional regulator.
       0.545
lipA
Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
      
 0.485
DFW101_1056
Uncharacterized protein.
      
 0.441
glyQ
Glycine--tRNA ligase alpha subunit.
      
 0.438
DFW101_2366
Glyoxalase/bleomycin resistance protein/dioxygenase.
   
    0.424
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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