STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_0928Glycosyl transferase group 1. (553 aa)    
Predicted Functional Partners:
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
    0.814
DFW101_3467
Glycosyl transferase family 9.
 
 
 0.764
DFW101_3170
Trehalose synthase.
   
 0.759
DFW101_3649
DUF3880 domain-containing protein.
 
    0.758
DFW101_3038
TPR_REGION domain-containing protein.
  
  
  0.757
DFW101_2078
DUF3880 domain-containing protein.
 
    0.750
DFW101_0085
Uncharacterized protein.
   
 
 0.748
DFW101_0806
TPR_REGION domain-containing protein.
  
  
  0.747
DFW101_0219
Glycosyl transferase family 9.
 
 
 0.743
DFW101_0217
DUF3880 domain-containing protein.
 
    0.741
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.