STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_0944FAD dependent oxidoreductase. (521 aa)    
Predicted Functional Partners:
nuoB
NADH-quinone oxidoreductase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
  
 
 0.999
DFW101_1275
Cytochrome c, class III, conserved region.
  
 0.999
DFW101_0959
Processing peptidase; Belongs to the peptidase M16 family.
   
 0.998
DFW101_1791
Cytochrome c family protein.
  
 0.998
DFW101_2984
Processing peptidase.
   
 0.998
DFW101_0271
NADH-quinone oxidoreductase, chain G; Belongs to the complex I 75 kDa subunit family.
  
 0.997
DFW101_2601
NADH dehydrogenase (Quinone).
  
 
 0.997
DFW101_1568
Cytochrome o ubiquinol oxidase, subunit III.
  
 
 0.994
DFW101_1567
Cytochrome o ubiquinol oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.993
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
 
 0.991
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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