STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1010Uncharacterized protein. (342 aa)    
Predicted Functional Partners:
DFW101_3641
Cysteine synthase.
 
  
  0.767
DFW101_2008
Cupin 2 conserved barrel domain protein.
 
     0.709
DFW101_1221
Methionine synthase.
   
 
  0.707
DFW101_3592
YcaO-domain protein.
 
     0.695
DFW101_1011
C_GCAxxG_C_C family protein.
       0.645
DFW101_3092
Uncharacterized protein.
    
  0.624
DFW101_2244
Uncharacterized protein.
  
     0.615
DFW101_2433
Uncharacterized protein.
    
 0.593
DFW101_3043
Sporulation domain-containing protein.
    
 0.593
DFW101_3487
Cell wall surface anchor family protein.
    
 0.593
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.