STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1069Prophage CP4-57 regulatory. (73 aa)    
Predicted Functional Partners:
DFW101_1074
Integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.833
DFW101_0909
Integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.790
DFW101_0694
Pyruvate:ferredoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
     
 0.772
DFW101_1231
2-oxoacid:acceptor oxidoreductase, alpha subunit.
     
 0.720
DFW101_2407
Glutamate synthase (NADPH).
    
  0.691
DFW101_0956
Phosphoenolpyruvate carboxykinase (ATP).
  
  
  0.622
DFW101_1761
Aconitate hydratase.
     
 0.606
DFW101_0007
Malic protein NAD-binding.
     
 0.581
DFW101_0465
Glu/Leu/Phe/Val dehydrogenase.
    
 0.576
DFW101_2405
Glutamine amidotransferase class-II.
    
  0.568
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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