Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DFW101_1069Prophage CP4-57 regulatory. (73 aa)    
Predicted Functional Partners:
DFW101_0694
Pyruvate:ferredoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
     
 0.861
DFW101_1074
Integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.834
DFW101_0909
Integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.791
DFW101_2407
Glutamate synthase (NADPH).
    
  0.776
DFW101_3253
Acetyl-CoA carboxylase.
     
  0.770
DFW101_1231
2-oxoacid:acceptor oxidoreductase, alpha subunit.
     
 0.761
DFW101_1068
Uncharacterized protein.
 
   
 0.547
DFW101_0956
Phosphoenolpyruvate carboxykinase (ATP).
  
  
  0.528
DFW101_1067
P4 alpha zinc-binding domain protein.
 
   
 0.514
DFW101_1761
Aconitate hydratase.
     
 0.509
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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