STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1158OsmC family protein. (150 aa)    
Predicted Functional Partners:
DFW101_1157
Radical SAM domain protein.
 
     0.827
DFW101_0694
Pyruvate:ferredoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
    
 0.734
DFW101_1156
Amidohydrolase 2.
 
   
 0.715
DFW101_1231
2-oxoacid:acceptor oxidoreductase, alpha subunit.
    
  0.669
DFW101_3252
Pyruvate carboxylase.
    
  0.590
DFW101_1676
GCN5-related N-acetyltransferase.
    
  0.581
DFW101_1138
Uncharacterized protein.
  
  
  0.574
DFW101_1155
Uncharacterized protein.
 
     0.571
DFW101_0150
Dihydrolipoyl dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
    
 0.568
DFW101_3317
Dihydrolipoyl dehydrogenase.
    
 0.568
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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