STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1233Desulfoferrodoxin. (125 aa)    
Predicted Functional Partners:
DFW101_1232
Ferritin; Iron-storage protein.
 
  
 0.974
DFW101_1804
Beta-lactamase domain protein.
 
  
 0.884
DFW101_1803
Rubredoxin.
  
  
 0.850
DFW101_0061
Rubredoxin; Belongs to the rubredoxin family.
  
  
 0.757
DFW101_1231
2-oxoacid:acceptor oxidoreductase, alpha subunit.
  
  
 0.640
DFW101_0259
CutA1 divalent ion tolerance protein.
   
    0.608
DFW101_1980
Peroxiredoxin.
  
  
 0.578
DFW101_3329
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.578
DFW101_2276
Rubrerythrin.
 
  
 0.563
DFW101_1230
Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit.
  
  
 0.552
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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