Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
DFW101_1237Penicillin-binding protein 1C. (763 aa)    
Predicted Functional Partners:
DFW101_3332
Penicillin-binding protein, 1A family.
  
  
0.891
DFW101_1532
Peptidoglycan glycosyltransferase.
  
  
 0.877
DFW101_2710
Penicillin-binding protein 2.
  
  
 0.877
DFW101_3581
Alpha-2-macroglobulin domain protein 2.
 
   
 0.861
DFW101_0611
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.761
DFW101_2147
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.761
DFW101_1238
Thiamine_BP domain-containing protein.
       0.727
DFW101_1236
Response regulator receiver protein.
       0.613
DFW101_2226
Isochorismatase hydrolase.
   
    0.554
ddpX
D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
    
  0.513
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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