STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1443AAA ATPase. (695 aa)    
Predicted Functional Partners:
DFW101_1444
Type II and III secretion system protein.
 
   
 0.834
DFW101_2561
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.747
DFW101_1447
Uncharacterized protein.
 
    0.669
DFW101_1442
Type II secretion system protein E.
     
 0.664
DFW101_1439
Uncharacterized protein.
 
     0.633
DFW101_1441
Type II secretion system F domain protein.
 
    0.626
DFW101_1445
Uncharacterized protein.
       0.615
DFW101_0111
FemAB-related protein, PEP-CTERM system-associated.
 
     0.601
DFW101_0103
Polysaccharide deactylase family protein, PEP-CTERM locus subfamily.
 
     0.535
DFW101_0091
Eight transmembrane protein EpsH.
 
    0.534
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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