STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1471Uncharacterized protein. (388 aa)    
Predicted Functional Partners:
DFW101_3502
Uncharacterized protein.
  
     0.691
DFW101_1472
3-hydroxyisobutyrate dehydrogenase.
       0.682
DFW101_2675
UPF0386 protein DFW101_2675; Belongs to the UPF0386 family.
  
     0.634
DFW101_2514
Uncharacterized conserved protein UCP033924.
  
     0.602
DFW101_1336
N-acetyltransferase domain-containing protein.
  
     0.573
uvrC
UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
   
    0.570
DFW101_2743
Transcriptional regulator, MucR family.
  
     0.522
DFW101_0122
Acetyltransf_6 domain-containing protein.
  
     0.499
DFW101_1470
CBS domain containing membrane protein.
       0.467
DFW101_1474
Transcriptional regulator, MucR family.
  
     0.466
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.