STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1622Putative hydrogenase-4 component E. (216 aa)    
Predicted Functional Partners:
DFW101_1625
NADH ubiquinone oxidoreductase 20 kDa subunit.
 
  
 0.989
DFW101_1624
NADH-ubiquinone oxidoreductase chain 49kDa.
 
  
 0.987
DFW101_1623
NADH dehydrogenase (Quinone).
 
  
 0.978
DFW101_1621
Respiratory-chain NADH dehydrogenase subunit 1.
 
  
 0.977
DFW101_1620
NADH dehydrogenase (Quinone).
 
  
 0.975
DFW101_2235
NADH dehydrogenase (Quinone).
  
  
 0.769
DFW101_2237
NADH-quinone oxidoreductase, B subunit; Belongs to the complex I 20 kDa subunit family.
  
  
 0.734
DFW101_3434
NADH dehydrogenase (Quinone).
 
  
 0.628
DFW101_2238
Respiratory-chain NADH dehydrogenase subunit 1.
  
  
 0.594
DFW101_1626
Uncharacterized protein.
 
     0.537
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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