Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1663Uncharacterized protein. (600 aa)    
Predicted Functional Partners:
DFW101_1662
ATPase associated with various cellular activities AAA_3.
       0.565
DFW101_1664
Uncharacterized protein.
       0.526
DFW101_1665
Uncharacterized protein.
       0.526
DFW101_1666
Tetratricopeptide TPR_2 repeat-containing protein.
       0.526
DFW101_1667
Von Willebrand factor type A.
       0.526
DFW101_1668
Uncharacterized protein.
       0.526
DFW101_1669
VWFA domain-containing protein.
       0.515
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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