STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1707Uncharacterized protein. (294 aa)    
Predicted Functional Partners:
DFW101_1706
Uncharacterized protein.
 
     0.953
DFW101_1705
Tetratricopeptide TPR_1 repeat-containing protein.
 
     0.857
DFW101_1704
Uncharacterized protein.
 
   
 0.814
DFW101_1702
Uncharacterized protein.
 
     0.806
DFW101_1708
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
   
 0.781
DFW101_0221
Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.775
DFW101_1161
Dissimilatory sulfite reductase D.
 
     0.756
DFW101_2198
Dissimilatory sulfite reductase D.
 
     0.755
DFW101_2045
Cytochrome c, class III, conserved region.
  
     0.733
DFW101_0370
HMC operon ORF 5 protein.
  
     0.730
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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