STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1731Glycosyl transferase family 2. (323 aa)    
Predicted Functional Partners:
DFW101_1730
WxcM-like domain-containing protein.
 
  
 0.860
DFW101_1732
Methyltransferase type 11.
 
    0.842
DFW101_1727
Glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.829
DFW101_1728
Oxidoreductase domain protein.
     
 0.807
DFW101_1729
NDP-hexose 23-dehydratase.
     
 0.778
DFW101_0025
Polysaccharide deacetylase.
  
 
 0.690
DFW101_2996
UDP-glucuronate decarboxylase.
  
 
 0.658
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.645
DFW101_2122
Glycosyl transferase family 2.
 
  
  0.643
DFW101_1271
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.633
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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