STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1903Endoribonuclease L-PSP. (126 aa)    
Predicted Functional Partners:
DFW101_0763
Translation elongation factor G.
   
 0.734
DFW101_2591
Small GTP-binding protein.
   
 0.734
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
   
 0.734
DFW101_2279
Prephenate dehydratase.
  
 
 0.710
DFW101_2126
Proline-specific peptidase; Belongs to the peptidase S33 family.
  
 
 0.643
DFW101_2226
Isochorismatase hydrolase.
  
 
 0.621
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
  
 
 0.618
DFW101_1750
Succinate-semialdehyde dehydrogenase (NAD(P)(+)).
   
 0.603
DFW101_2676
Glycolaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.603
DFW101_3424
Succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.603
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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