Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DFW101_1908Nitrite reductase (cytochrome; ammonia-forming); Belongs to the cytochrome c-552 family. (488 aa)    
Predicted Functional Partners:
DFW101_1909
Cytochrome c nitrate reductase, small subunit.
 
 0.999
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
     
 0.884
DFW101_2771
Glutamine synthetase, type I; Belongs to the glutamine synthetase family.
     
 0.860
DFW101_3428
2-nitropropane dioxygenase NPD.
     
 0.842
DFW101_0471
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
     
  0.836
DFW101_0472
Nitrogenase protein alpha chain.
     
  0.836
DFW101_1929
Glutamine synthetase type III domain-containing protein; Belongs to the glutamine synthetase family.
     
  0.836
DFW101_0465
Glu/Leu/Phe/Val dehydrogenase.
     
  0.833
DFW101_1117
Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 
 0.823
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
 
 0.805
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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