STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2004Nitrite and sulphite reductase 4Fe-4S region. (210 aa)    
Predicted Functional Partners:
DFW101_2005
Iron-sulfur binding protein.
    
  0.873
DFW101_2341
Uncharacterized protein.
   
 
 0.846
DFW101_3591
Sulfur relay protein, TusE/DsrC/DsvC family.
   
 
 0.846
DFW101_0694
Pyruvate:ferredoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
 
 0.845
DFW101_1706
Uncharacterized protein.
 
 
   0.761
DFW101_1161
Dissimilatory sulfite reductase D.
 
 
 
 0.756
DFW101_2198
Dissimilatory sulfite reductase D.
 
 
 
 0.756
DFW101_2407
Glutamate synthase (NADPH).
  
 
 0.748
DFW101_1187
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 
  0.747
DFW101_1231
2-oxoacid:acceptor oxidoreductase, alpha subunit.
  
 
 0.738
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.