STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2005Iron-sulfur binding protein. (439 aa)    
Predicted Functional Partners:
DFW101_2004
Nitrite and sulphite reductase 4Fe-4S region.
    
  0.873
DFW101_1791
Cytochrome c family protein.
 
  
 0.777
DFW101_3636
Uncharacterized protein.
  
     0.702
DFW101_0880
Sporulation domain-containing protein.
  
     0.697
DFW101_2375
Uncharacterized protein.
  
     0.670
DFW101_1242
Uncharacterized protein.
  
     0.649
DFW101_1909
Cytochrome c nitrate reductase, small subunit.
  
 
 0.636
DFW101_1533
Uncharacterized protein.
  
     0.628
DFW101_1084
Uncharacterized protein.
  
     0.624
DFW101_0961
Uncharacterized protein.
  
     0.611
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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