STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2008Cupin 2 conserved barrel domain protein. (105 aa)    
Predicted Functional Partners:
DFW101_3463
Uncharacterized protein.
  
     0.726
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
  
  0.721
DFW101_2275
Carboxymuconolactone decarboxylase.
 
  
 0.710
DFW101_1010
Uncharacterized protein.
 
     0.709
DFW101_3117
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
 0.697
DFW101_2459
UspA domain-containing protein.
  
     0.696
DFW101_2269
CheC, inhibitor of MCP methylation.
    
   0.695
DFW101_2270
Response regulator receiver protein.
    
   0.695
DFW101_3085
Dual specificity protein phosphatase.
  
     0.693
DFW101_2279
Prephenate dehydratase.
  
 
 0.682
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.