STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2133Uncharacterized protein. (291 aa)    
Predicted Functional Partners:
DFW101_0034
Succinate--CoA ligase (ADP-forming).
   
  
 0.497
DFW101_3062
PhoH family protein.
   
    0.493
DFW101_1368
Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.466
DFW101_0087
Adenosylmethionine--8-amino-7-oxononanoate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.465
DFW101_2134
DEAD/DEAH box helicase domain protein.
  
 
 0.457
DFW101_0781
Peptidase M24.
    
 0.453
DFW101_3185
Peptidase M24.
    
 0.453
DFW101_1428
Uncharacterized protein.
 
   
 0.451
DFW101_2290
Lysine exporter protein (LYSE/YGGA).
  
   
 0.442
DFW101_0544
Farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
    
  0.437
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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