STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddpXD-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (219 aa)    
Predicted Functional Partners:
DFW101_0025
Polysaccharide deacetylase.
    
 0.859
DFW101_3269
Glycosyl transferase family 2.
 
  
 0.856
DFW101_2195
Beta-lactamase.
 
 
 0.849
DFW101_3595
Beta-lactamase.
 
 
 0.849
DFW101_1586
Uncharacterized protein.
    
 0.824
DFW101_1765
Uncharacterized protein.
    
 0.794
DFW101_0490
Beta-N-acetylhexosaminidase.
 
   
  0.763
DFW101_0644
Uncharacterized protein.
    
 0.694
DFW101_0846
Uncharacterized protein.
    
 0.694
DFW101_0592
Uncharacterized protein family UPF0079, ATPase.
    
  0.685
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.