STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2186Nitrate reductase gamma subunit. (333 aa)    
Predicted Functional Partners:
DFW101_2185
Hme subunit D.
 
 
 0.950
DFW101_2187
RsbRD_N domain-containing protein.
 
   
 0.932
DFW101_2184
Hme subunit E.
 
  
 0.929
DFW101_2182
Polysulfide reductase NrfD.
 
  
 0.922
DFW101_2183
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
 
 0.900
DFW101_1872
Methyl-viologen-reducing hydrogenase delta subunit.
 
   
 0.873
DFW101_2294
Major facilitator superfamily MFS_1.
  
 
 0.869
DFW101_3591
Sulfur relay protein, TusE/DsrC/DsvC family.
 
   
 0.837
DFW101_1159
Sulfite reductase, dissimilatory-type alpha subunit.
 
   
 0.828
DFW101_1160
Sulfite reductase, dissimilatory-type beta subunit.
 
   
 0.828
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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