STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2274Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen. (207 aa)    
Predicted Functional Partners:
DFW101_2273
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
 
     0.929
DFW101_2561
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.839
DFW101_1221
Methionine synthase.
 
  
  0.750
DFW101_1980
Peroxiredoxin.
 
 
 0.678
DFW101_2625
Aldehyde dehydrogenase (FAD-independent).
     
 0.678
DFW101_3385
Isoquinoline 1-oxidoreductase.
     
 0.678
DFW101_2276
Rubrerythrin.
     
 0.664
DFW101_2275
Carboxymuconolactone decarboxylase.
     
 0.653
DFW101_3641
Cysteine synthase.
  
 
 0.649
DFW101_1029
Homoserine dehydrogenase.
    
  0.634
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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