STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2321Phage DNA methylase. (224 aa)    
Predicted Functional Partners:
DFW101_2320
Uncharacterized protein.
       0.795
DFW101_1821
Methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.
  
  
 0.594
DFW101_2465
Terminase small subunit.
  
    0.583
DFW101_0322
Phage virion morphogenesis protein.
  
    0.462
DFW101_0312
Uncharacterized protein.
  
  
 0.416
DFW101_1406
Uncharacterized protein.
  
  
 0.416
DFW101_3485
Uncharacterized protein.
  
  
 0.416
DFW101_2464
Terminase_6 domain-containing protein.
  
    0.415
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.