STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2328Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (295 aa)    
Predicted Functional Partners:
DFW101_2584
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.559
DFW101_0847
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.545
DFW101_2407
Glutamate synthase (NADPH).
   
 
 0.527
DFW101_1805
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.513
DFW101_2329
Uncharacterized protein.
 
     0.509
DFW101_0792
Response regulator receiver protein.
     
 0.457
DFW101_3089
Uncharacterized protein.
     
 0.449
mobA
Molybdenum cofactor guanylyltransferase; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
     
 0.441
DFW101_3041
Response regulator receiver protein.
  
  
  0.439
DFW101_1649
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.437
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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