STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2349Uncharacterized protein. (164 aa)    
Predicted Functional Partners:
DFW101_2350
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.764
DFW101_2352
Uncharacterized protein.
       0.740
DFW101_2351
Uncharacterized protein.
       0.726
DFW101_1572
GAF sensor hybrid histidine kinase.
    
 0.713
DFW101_1599
Multi-sensor hybrid histidine kinase.
    
 0.692
DFW101_3268
Hpt domain protein.
    
 0.691
DFW101_2271
Multi-sensor hybrid histidine kinase.
    
 0.688
DFW101_0792
Response regulator receiver protein.
    
 0.686
DFW101_1888
Multi-sensor signal transduction histidine kinase.
    
 0.682
DFW101_3056
Histidine kinase.
    
 0.682
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.