STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2375Uncharacterized protein. (420 aa)    
Predicted Functional Partners:
DFW101_3636
Uncharacterized protein.
  
     0.770
DFW101_0880
Sporulation domain-containing protein.
  
     0.751
DFW101_0713
YHS domain-containing protein.
  
     0.735
DFW101_1242
Uncharacterized protein.
  
     0.725
DFW101_1082
GAF domain protein.
  
     0.708
DFW101_1084
Uncharacterized protein.
  
     0.701
DFW101_1533
Uncharacterized protein.
  
     0.689
DFW101_1766
FG-GAP repeat protein.
  
     0.673
DFW101_2005
Iron-sulfur binding protein.
  
     0.670
DFW101_0532
DDE_Tnp_IS1595 domain-containing protein.
  
     0.657
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.