STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2425HcyBio domain-containing protein. (388 aa)    
Predicted Functional Partners:
DFW101_0626
NIL domain-containing protein.
 
 
 0.930
DFW101_1221
Methionine synthase.
    
 0.837
DFW101_3587
ApbE family lipoprotein.
 
   
 0.837
DFW101_3641
Cysteine synthase.
 
  
  0.736
DFW101_2424
Kinase.
       0.727
DFW101_1708
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
  
  0.713
DFW101_0591
Aspartokinase; Belongs to the aspartokinase family.
    
  0.669
DFW101_1789
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
    
  0.669
DFW101_3606
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
    
  0.669
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
    
  0.669
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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