STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2460Tetratricopeptide TPR_1 repeat-containing protein. (206 aa)    
Predicted Functional Partners:
DFW101_0557
Cytochrome c assembly protein.
  
 
 0.909
DFW101_1301
Peptidoglycan-binding lysin domain protein.
 
 0.843
secF
Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
  
    0.826
DFW101_3308
Tetratricopeptide TPR_2 repeat-containing protein.
 
 0.719
DFW101_0500
Tetratricopeptide TPR_1 repeat-containing protein.
 
 0.702
DFW101_1088
Tetratricopeptide TPR_1 repeat-containing protein.
 
 0.693
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.684
DFW101_1413
Metallophosphoesterase.
 
  
 0.657
DFW101_1705
Tetratricopeptide TPR_1 repeat-containing protein.
 
     0.648
DFW101_3042
Tetratricopeptide TPR_1 repeat-containing protein.
 
 0.632
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.