STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2708Rod shape-determining protein MreC. (377 aa)    
Predicted Functional Partners:
DFW101_2707
Cell shape determining protein, MreB/Mrl family.
 
 
 0.999
DFW101_1081
Cell shape determining protein, MreB/Mrl family.
 
 
 0.995
DFW101_2710
Penicillin-binding protein 2.
 
 
 0.995
DFW101_1532
Peptidoglycan glycosyltransferase.
 
 
 0.935
mrdB
Peptidoglycan glycosyltransferase MrdB; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.895
DFW101_2479
DNA repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.881
DFW101_2709
Uncharacterized protein.
 
     0.835
DFW101_0148
dTTP/UTP pyrophosphatase; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.727
DFW101_0733
Transcriptional regulator, XRE family.
 
 
 
 0.719
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.694
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.