STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2709Uncharacterized protein. (156 aa)    
Predicted Functional Partners:
DFW101_2708
Rod shape-determining protein MreC.
 
     0.835
DFW101_2707
Cell shape determining protein, MreB/Mrl family.
       0.805
DFW101_2710
Penicillin-binding protein 2.
       0.805
DFW101_0770
Uncharacterized protein.
  
     0.774
DFW101_0771
Uncharacterized protein.
  
     0.774
DFW101_2478
DNA polymerase III delta.
  
     0.774
DFW101_2933
Uncharacterized protein.
  
     0.774
DFW101_0393
Uncharacterized protein.
  
     0.773
DFW101_0772
Cell division protein FtsB; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.773
DFW101_1902
Uncharacterized protein.
  
     0.773
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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