STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2800Type IV secretory pathway VirB3 family protein. (92 aa)    
Predicted Functional Partners:
DFW101_2805
P-type conjugative transfer protein TrbG.
  
 
 0.983
DFW101_2816
Conjugation TrbI family protein.
  
 
 0.982
DFW101_2799
Conjugal transfer protein TrbC.
   
 0.973
DFW101_2802
P-type conjugative transfer protein TrbJ.
    
 0.969
DFW101_2801
CagE, TrbE, VirB component of type IV transporter system, conserved region.
    
 0.963
DFW101_2798
P-type conjugative transfer ATPase TrbB.
    
 0.956
DFW101_2803
P-type conjugative transfer protein TrbL.
    
 0.921
DFW101_2804
VirB8 family protein.
    
 0.910
DFW101_3300
Type II secretion system protein E.
    
 0.841
DFW101_2796
Cobyrinic acid ac-diamide synthase.
     
 0.814
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.