STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2812PilS domain-containing protein. (159 aa)    
Predicted Functional Partners:
DFW101_2815
Shufflon domain protein.
    
 0.897
DFW101_2811
Type II secretion system F domain protein.
     
 0.819
DFW101_2813
Type II secretion system protein E.
     
 0.818
DFW101_2810
Type II secretion system protein E.
     
 0.817
DFW101_2807
Type II and III secretion system protein; Belongs to the bacterial secretin family.
     
 0.794
DFW101_2814
PilM inner membrane family protein.
       0.773
DFW101_2816
Conjugation TrbI family protein.
       0.773
DFW101_2817
TRAG family protein.
       0.773
DFW101_2818
Conjugative transfer signal peptidase TraF.
       0.773
DFW101_2819
Uncharacterized protein.
       0.773
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.