STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2820Uncharacterized protein. (730 aa)    
Predicted Functional Partners:
DFW101_2817
TRAG family protein.
 
    0.963
DFW101_2816
Conjugation TrbI family protein.
 
     0.962
DFW101_2818
Conjugative transfer signal peptidase TraF.
 
     0.960
DFW101_2805
P-type conjugative transfer protein TrbG.
 
     0.940
DFW101_2804
VirB8 family protein.
 
     0.938
DFW101_2811
Type II secretion system F domain protein.
 
     0.917
DFW101_2803
P-type conjugative transfer protein TrbL.
 
     0.905
DFW101_2801
CagE, TrbE, VirB component of type IV transporter system, conserved region.
 
     0.885
DFW101_2815
Shufflon domain protein.
 
     0.881
DFW101_2799
Conjugal transfer protein TrbC.
 
     0.873
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.