STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2949Nucleotidyltransferase substrate binding protein, HI0074 family. (141 aa)    
Predicted Functional Partners:
DFW101_2950
Restriction modification system DNA specificity domain protein.
 
     0.926
DFW101_2948
N-6 DNA methylase.
     0.879
DFW101_2951
Type I site-specific deoxyribonuclease.
 
     0.811
DFW101_0694
Pyruvate:ferredoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
    
  0.683
DFW101_0007
Malic protein NAD-binding.
    
  0.605
DFW101_2007
Iron-sulfur binding protein.
  
  
  0.521
DFW101_1152
Uncharacterized protein.
  
  
  0.519
DFW101_2486
Ketose-bisphosphate aldolase class-II.
    
  0.499
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
  0.477
leuC
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
    
  0.453
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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