STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2974Uncharacterized protein. (110 aa)    
Predicted Functional Partners:
DFW101_1117
Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 
 0.991
DFW101_2894
Nitrogen-fixing NifU domain protein.
  
  
 0.786
DFW101_0778
Cytochrome c, class III, conserved region.
  
  
 0.766
DFW101_1116
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 0.763
DFW101_0791
ABC transporter related protein.
  
 
 0.761
DFW101_1706
Uncharacterized protein.
  
     0.748
DFW101_0790
SufBD protein.
  
 
 0.736
DFW101_1297
HEAT domain containing protein.
    
 
 0.736
DFW101_1584
PBS lyase HEAT domain protein repeat-containing protein.
    
 
 0.736
DFW101_1704
Uncharacterized protein.
    
 
 0.736
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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