STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_3105Natural resistance-associated macrophage protein. (428 aa)    
Predicted Functional Partners:
DFW101_0965
ABC-3 protein.
  
  
 0.679
DFW101_3103
Secretion protein HlyD family protein.
 
     0.587
DFW101_3104
Transcriptional regulator, MarR family.
     
 0.546
DFW101_0966
Phosphonate-transporting ATPase.
  
  
 0.532
DFW101_2267
MgtE intracellular region.
 
  
 0.514
DFW101_0967
Periplasmic solute binding protein.
  
  
 0.490
DFW101_3102
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
 
   
 0.486
atpE
ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
     
 0.478
DFW101_1329
ATPase, P-type (Transporting), HAD superfamily, subfamily IC.
   
 0.460
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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