STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_3123O-antigen polymerase. (651 aa)    
Predicted Functional Partners:
DFW101_1271
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.927
DFW101_1276
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.732
rny
Ribonuclease Y; Endoribonuclease that initiates mRNA decay.
  
  
 0.662
DFW101_2203
Uncharacterized protein.
  
  
 0.657
DFW101_0974
Glycosyl transferase group 1.
  
 
 0.609
DFW101_3404
Histidinol-phosphate phosphatase family protein.
    
  0.606
DFW101_2737
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
    
 0.601
DFW101_0097
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.586
DFW101_3122
Glycosyl transferase family 2.
  
  
 0.561
DFW101_0098
Polysaccharide export protein.
  
  
 0.551
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.