STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_3188Tetratricopeptide TPR_2 repeat-containing protein. (256 aa)    
Predicted Functional Partners:
DFW101_3467
Glycosyl transferase family 9.
  
  
  0.825
DFW101_2559
Tetratricopeptide TPR_1 repeat-containing protein.
  
  
 0.819
DFW101_3005
Uncharacterized protein.
  
  
  0.785
DFW101_0219
Glycosyl transferase family 9.
  
  
  0.765
DFW101_3042
Tetratricopeptide TPR_1 repeat-containing protein.
 
  
  0.760
DFW101_0500
Tetratricopeptide TPR_1 repeat-containing protein.
 
  
  0.755
DFW101_0161
TPR_REGION domain-containing protein.
  
     0.748
DFW101_0493
Uncharacterized protein.
  
     0.744
DFW101_2078
DUF3880 domain-containing protein.
  
     0.744
DFW101_0217
DUF3880 domain-containing protein.
  
     0.743
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.