STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_3286Uncharacterized protein. (140 aa)    
Predicted Functional Partners:
DFW101_3287
Metal dependent phosphohydrolase.
 
     0.877
DFW101_3288
Response regulator receiver modulated diguanylate cyclase.
 
     0.826
DFW101_3285
DNA protecting protein DprA.
       0.795
cpoB-2
Cell division coordinator CpoB; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
       0.777
DFW101_1377
Uncharacterized protein.
  
     0.762
DFW101_3649
DUF3880 domain-containing protein.
  
     0.757
DFW101_2557
Uncharacterized protein.
  
     0.739
DFW101_3005
Uncharacterized protein.
  
     0.738
DFW101_3420
Tetratricopeptide TPR_2 repeat-containing protein.
  
     0.738
DFW101_2078
DUF3880 domain-containing protein.
  
     0.736
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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