STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_3296Flp pilus assembly protein CpaB. (300 aa)    
Predicted Functional Partners:
DFW101_3297
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.993
DFW101_3299
Cobyrinic acid ac-diamide synthase.
 
  
 0.991
DFW101_3301
Type II secretion system F domain protein.
 
  
 0.981
DFW101_3302
Type II secretion system F domain protein.
 
  
 0.978
DFW101_1660
Peptidase A24A prepilin type IV.
 
  
 0.971
DFW101_2786
Flp/Fap pilin component.
 
  
 0.950
DFW101_3300
Type II secretion system protein E.
 
  
 0.946
DFW101_3305
TadE family protein.
 
  
 0.891
DFW101_2798
P-type conjugative transfer ATPase TrbB.
 
  
 0.883
DFW101_3403
Flp/Fap pilin component.
  
  
 0.871
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.